nrv package
Subpackages
- nrv.backend package
- Submodules
- nrv.backend.MCore module
Mcore_handler
Mcore_handler.do_master_only_work()
Mcore_handler.gather_jobs()
Mcore_handler.gather_jobs_as_array()
Mcore_handler.is_alone()
Mcore_handler.is_master()
Mcore_handler.master_broadcasts_array_to_all()
Mcore_handler.master_broadcasts_to_all()
Mcore_handler.recieve_data_from_slave()
Mcore_handler.recieve_potential_array_from_master()
Mcore_handler.say_hello()
Mcore_handler.send_back_array_to_dest()
Mcore_handler.send_data_to_master()
Mcore_handler.send_synchronization_flag()
Mcore_handler.split_job_from_arrays()
Mcore_handler.split_job_from_arrays_to_slaves()
Mcore_handler.sum_jobs()
synchronize_processes()
- nrv.backend.NRV_Class module
- nrv.backend.compileMods module
- nrv.backend.file_handler module
- nrv.backend.inouts module
- nrv.backend.log_interface module
- nrv.backend.parameters module
- Module contents
- nrv.fmod package
- Subpackages
- Submodules
- nrv.fmod.electrodes module
- nrv.fmod.extracellular module
FEM_stimulation
FEM_stimulation.add_electrode()
FEM_stimulation.compute_electrodes_footprints()
FEM_stimulation.load()
FEM_stimulation.remove_fascicles()
FEM_stimulation.reshape_fascicle()
FEM_stimulation.reshape_nerve()
FEM_stimulation.reshape_outerBox()
FEM_stimulation.run_model()
FEM_stimulation.save()
FEM_stimulation.set_Ncore()
FEM_stimulation.setup_FEM()
extracellular_context
extracellular_context.add_electrode()
extracellular_context.change_stimulus_from_elecrode()
extracellular_context.clear_electrodes_footprints()
extracellular_context.compute_vext()
extracellular_context.is_empty()
extracellular_context.load_extracel_context()
extracellular_context.reset_electrodes()
extracellular_context.reset_stimuli()
extracellular_context.save_extracel_context()
extracellular_context.set_electrodes_footprints()
extracellular_context.synchronise_stimuli()
extracellular_context.translate()
is_FEM_extra_stim()
is_analytical_extra_stim()
is_extra_stim()
load_any_extracel_context()
stimulation
- nrv.fmod.materials module
- nrv.fmod.recording module
NodeD_interpol()
is_recorder()
is_recording_point()
recorder
recorder.add_axon_contribution()
recorder.add_recording_point()
recorder.compute_footprints()
recorder.gather_all_recordings()
recorder.init_recordings()
recorder.is_empty()
recorder.load_recorder()
recorder.reset_recordings()
recorder.save_recorder()
recorder.set_recording_point()
recorder.set_recording_volume()
recorder.set_recording_yplane()
recorder.set_recording_zplane()
recorder.set_time()
recorder.translate()
recording_point
recording_point.add_axon_contribution()
recording_point.compute_LSA_isotropic_footprint()
recording_point.compute_PSA_anisotropic_footprint()
recording_point.compute_PSA_isotropic_footprint()
recording_point.get_ID()
recording_point.get_method()
recording_point.init_recording()
recording_point.load_recording_point()
recording_point.reset_recording()
recording_point.save_recording_point()
recording_point.set_method()
recording_point.translate()
- nrv.fmod.stimulus module
datfile_2_stim()
get_equal_timing_copies()
is_stim()
set_common_time_series()
stimulus
stimulus.append()
stimulus.biphasic_pulse()
stimulus.concatenate()
stimulus.constant()
stimulus.insert_samples()
stimulus.integrate()
stimulus.len()
stimulus.load_stimulus()
stimulus.pulse()
stimulus.ramp()
stimulus.ramp_lim()
stimulus.save_stimulus()
stimulus.sinus()
stimulus.snap_time()
stimulus.sort()
stimulus.square()
- nrv.fmod.FEM module
- Module contents
- nrv.nmod package
- Submodules
- nrv.nmod.axons module
axon
axon.attach_extracellular_recorder()
axon.attach_extracellular_stimulation()
axon.change_stimulus_from_elecrode()
axon.get_electrodes_footprints_on_axon()
axon.get_ionic_current()
axon.get_membrane_capacitance()
axon.get_membrane_conductance()
axon.get_membrane_current()
axon.get_membrane_voltage()
axon.get_particules_values()
axon.insert_I_Clamp()
axon.insert_V_Clamp()
axon.load()
axon.load_axon()
axon.save()
axon.save_axon()
axon.set_conductance_recorders()
axon.set_ionic_current_recorders()
axon.set_membrane_current_recorders()
axon.set_membrane_voltage_recorders()
axon.set_particules_values_recorders()
axon.shut_recorder_down()
axon.simulate()
axon.topology()
axon_test
axon_test.get_ionic_current()
axon_test.get_membrane_current()
axon_test.get_membrane_voltage()
axon_test.insert_I_Clamp()
axon_test.insert_V_Clamp()
axon_test.set_conductance_recorders()
axon_test.set_ionic_current_recorders()
axon_test.set_membrane_current_recorders()
axon_test.set_membrane_voltage_recorders()
axon_test.set_particules_values_recorders()
create_Nseg_freq_shape()
Nsec
shape
freq
freq_min
alpha_max
d_lambda_rule()
L
d_lambda
f
sec
purge_neuron()
rotate_list()
l
n
- nrv.nmod.fascicle_generator module
axon_packer()
compute_P_fast()
create_axon_population()
create_generator_from_stat()
delete_collisions()
fill_area_with_axons()
load_axon_population()
load_placed_axon_population()
load_stat()
one_Gamma()
plot_situation()
save_axon_population()
save_placed_axon_population()
shuffle_population()
two_Gamma()
- nrv.nmod.fascicles module
fascicle
fascicle.attach_extracellular_recorder()
fascicle.attach_extracellular_stimulation()
fascicle.change_stimulus_from_elecrode()
fascicle.clear_context()
fascicle.compute_electrodes_footprints()
fascicle.define_circular_contour()
fascicle.define_ellipsoid_contour()
fascicle.define_length()
fascicle.fill()
fascicle.fill_with_placed_population()
fascicle.fill_with_population()
fascicle.fit_circular_contour()
fascicle.generate_ligned_NoR_position()
fascicle.generate_random_NoR_position()
fascicle.get_axons_parameters()
fascicle.get_circular_contour()
fascicle.get_electrodes_footprints_on_axons()
fascicle.import_contour()
fascicle.insert_I_Clamp()
fascicle.load()
fascicle.load_fascicle_configuration()
fascicle.plot()
fascicle.plot_x()
fascicle.remove_axons_electrode_overlap()
fascicle.remove_axons_size_threshold()
fascicle.remove_myelinated_axons()
fascicle.remove_unmyelinated_axons()
fascicle.rotate_axons()
fascicle.rotate_fascicle()
fascicle.save()
fascicle.save_fascicle_configuration()
fascicle.set_ID()
fascicle.set_axons_parameters()
fascicle.shut_recorder_down()
fascicle.simulate()
fascicle.translate_axons()
fascicle.translate_fascicle()
is_fascicle()
- nrv.nmod.myelinated module
get_MRG_parameters()
diameter
get_length_from_nodes()
diameter
nodes
myelinated
myelinated.get_Nav_values()
myelinated.get_ionic_conductance()
myelinated.get_ionic_current()
myelinated.get_membrane_capacitance()
myelinated.get_membrane_conductance()
myelinated.get_membrane_current()
myelinated.get_membrane_voltage()
myelinated.get_myeline_capacitance()
myelinated.get_myeline_conductance()
myelinated.get_particles_values()
myelinated.insert_I_Clamp()
myelinated.insert_I_Clamp_node()
myelinated.insert_V_Clamp()
myelinated.insert_V_Clamp_node()
myelinated.save()
myelinated.set_Markov_Nav()
myelinated.set_Nav_recorders()
myelinated.set_conductance_recorders()
myelinated.set_ionic_current_recorders()
myelinated.set_membrane_current_recorders()
myelinated.set_membrane_voltage_recorders()
myelinated.set_particules_values_recorders()
- nrv.nmod.nerve module
nerve
nerve.add_fascicle()
nerve.attach_extracellular_recorder()
nerve.attach_extracellular_stimulation()
nerve.change_stimulus_from_elecrode()
nerve.clear_context()
nerve.compute_electrodes_footprints()
nerve.define_circular_contour()
nerve.define_ellipsoid_contour()
nerve.define_length()
nerve.fit_circular_contour()
nerve.get_axons_parameters()
nerve.get_circular_contour()
nerve.get_fascicles()
nerve.import_contour()
nerve.insert_I_Clamp()
nerve.load()
nerve.plot()
nerve.save()
nerve.set_ID()
nerve.set_axons_parameters()
nerve.shut_recorder_down()
nerve.simulate()
- nrv.nmod.thin_myelinated module
- nrv.nmod.unmyelinated module
unmyelinated
unmyelinated.get_ionic_conductance()
unmyelinated.get_ionic_current()
unmyelinated.get_membrane_capacitance()
unmyelinated.get_membrane_conductance()
unmyelinated.get_membrane_current()
unmyelinated.get_membrane_voltage()
unmyelinated.get_particles_values()
unmyelinated.insert_I_Clamp()
unmyelinated.insert_V_Clamp()
unmyelinated.save()
unmyelinated.set_conductance_recorders()
unmyelinated.set_ionic_current_recorders()
unmyelinated.set_membrane_current_recorders()
unmyelinated.set_membrane_voltage_recorders()
unmyelinated.set_particules_values_recorders()
- Module contents
- nrv.optim package
- nrv.utils package
Module contents
NeuRon Virtualizer, large scale modeling of Peripheral Nervous System with random stimulation waveforms