Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | X | Y | Z _ __init__() (nrv.backend.bcolors method) (nrv.backend.NRV_class method) (nrv.backend.nrv_config method) (nrv.backend.NRV_Encoder method) (nrv.backend.nrv_parameters method) (nrv.backend.NRV_results method) (nrv.backend.NRV_simulable method) (nrv.backend.NRV_singleton method) (nrv.backend.sim_results method) (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) (nrv.eit.eit_inverse method) (nrv.eit.pyeit_inverse method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.eit.utils.Figure_elec method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMResults method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) (nrv.fmod.FEM.fenics_utils.fenics_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.material method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) (nrv.nmod.utils.Placer method) (nrv.optim.cost_function method) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.context_modifier method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.optim_results method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.optim.optim_utils.stimulus_CM method) (nrv.optim.Optimizer method) (nrv.optim.Problem method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation method) (nrv.utils.function_1D method) (nrv.utils.function_2D method) (nrv.utils.function_ND method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack method) (nrv.utils.nrv_function method) (nrv.utils.nrv_interp method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) (nrv.utils.stimulus method) A A (nrv.nmod.fascicle property) ackley (class in nrv.utils) add_axon() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_axon_contribution() (nrv.fmod.recorder method) (nrv.fmod.recording_point method) add_boundary() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) add_box() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_cone() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_CUFF() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_CUFF_MEA() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_CUFF_MP() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_cylinder() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_domain() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) add_domains() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_electrode() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) add_fascicle() (nrv.nmod.nerve method) add_filter() (nrv.optim.optim_utils.optim_results method) add_from_cshape() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_inboundary() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) add_LIFE() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_line() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_mask() (nrv.nmod.axon_population method) add_nerve_plot() (in module nrv.eit.utils) (nrv.eit.utils.Figure_elec method) add_point() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_recording_point() (nrv.fmod.recorder method) add_results() (nrv.eit.results.eit_results_list method) add_sim_mask() (nrv.nmod.fascicle method) aline_V() (nrv.fmod.FEM.fenics_utils.FEMResults method) AP_detection() (in module nrv.ui) append() (nrv.utils.stimulus method) APs_in_timeframe() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) APs_reached_end() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) area (nrv.utils.geom.Circle property) (nrv.utils.geom.CShape property) (nrv.utils.geom.Ellipse property) (nrv.utils.geom.Polygon property) attach_extracellular_recorder() (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) attach_extracellular_stimulation() (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) autoset_optimizer() (nrv.optim.Problem method) axon (class in nrv.nmod) axon_AP_threshold() (in module nrv.ui) axon_block_threshold() (in module nrv.ui) axon_packer() (in module nrv.nmod.utils) axon_pop (nrv.nmod.axon_population property) axon_population (class in nrv.nmod) axon_results (class in nrv.nmod.results) axon_state() (in module nrv.ui) axons (nrv.nmod.results.nerve_results property) axons_pop_properties (nrv.nmod.results.nerve_results property) axons_type (nrv.nmod.results.nerve_results property) axs (nrv.eit.utils.Figure_elec property) B bbox (nrv.utils.geom.Circle property) (nrv.utils.geom.CShape property) (nrv.utils.geom.Ellipse property) (nrv.utils.geom.Polygon property) bbox_size (nrv.utils.geom.Circle property) (nrv.utils.geom.CShape property) (nrv.utils.geom.Ellipse property) (nrv.utils.geom.Polygon property) bcolors (class in nrv.backend) beale (class in nrv.utils) biphasic_pulse() (nrv.utils.stimulus method) biphasic_stimulus_CM (class in nrv.optim.optim_utils) block() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) block_summary() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) blocking_threshold_from_axon() (in module nrv.ui) blocking_threshold_point_source() (in module nrv.ui) BOLD (nrv.backend.bcolors attribute) booth (class in nrv.utils) boxplot() (nrv.eit.utils.Figure_elec method) build_and_mesh() (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FENICS_model method) build_mesh() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) bukin6 (class in nrv.utils) C c (nrv.utils.geom.Circle property) (nrv.utils.geom.Ellipse property) (nrv.utils.geom.Polygon property) call_method() (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation static method) (nrv.utils.function_1D method) (nrv.utils.function_2D static method) (nrv.utils.function_ND static method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack static method) (nrv.utils.nrv_function static method) (nrv.utils.nrv_interp static method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) cap_duration() (nrv.eit.results.eit_results_list method) CAP_time_detection() (in module nrv.ui) cbar() (nrv.eit.pyeit_inverse method) center (nrv.nmod.fascicle property) change_stimulus_from_electrode() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) charge_quantity_CE (class in nrv.optim.optim_utils) check_electrodes_overlap() (in module nrv.fmod) check_function_kwargs() (in module nrv.backend) check_json_fname() (in module nrv.backend) check_placement (nrv.nmod.axon_population property) check_sim_dom() (in module nrv.fmod.FEM) check_test_AP() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) Circle (class in nrv.utils.geom) circle_overlap_checker() (in module nrv.utils.geom) clear() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.fmod.FEM.COMSOL_model method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) clear_context() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) clear_electrodes_footprints() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) clear_fem_res() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) clear_footprint() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) clear_frequency() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) clear_geometry() (nrv.nmod.axon_population method) clear_gmsh() (in module nrv.fmod.FEM.mesh_creator) clear_I_Clamp() (nrv.nmod.axon method) clear_I_clamp() (nrv.nmod.fascicle method) clear_I_Clamp() (nrv.nmod.myelinated method) clear_I_clamp() (nrv.nmod.nerve method) clear_I_Clamp() (nrv.nmod.unmyelinated method) clear_masks() (nrv.nmod.axon_population method) clear_population() (nrv.nmod.axon_population method) clear_population_placement() (nrv.nmod.axon_population method) clear_prompt_line() (in module nrv.backend) clear_V_Clamp() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) clone_res() (nrv.fmod.FEM.fenics_utils.FEMResults method) close() (nrv.fmod.FEM.COMSOL_model method) closest_point_in_mesh() (in module nrv.fmod.FEM.fenics_utils) color_elec() (in module nrv.eit.utils) (nrv.eit.utils.Figure_elec method) colormap_plot() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) compute_best_pos() (nrv.optim.optim_utils.optim_results method) compute_complex_admitance() (in module nrv.utils) compute_conductance() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) compute_cost() (nrv.optim.Problem method) compute_domains() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) compute_effective_conductivity() (in module nrv.fmod) compute_electrodes_footprints() (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) (nrv.nmod.fascicle method) (nrv.nmod.nerve method) compute_entity_domain() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) compute_f_mem() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) compute_field() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) compute_footprint() (nrv.fmod.point_source_electrode method) compute_footprints() (nrv.fmod.recorder method) compute_geo() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) compute_LSA_isotropic_footprint() (nrv.fmod.recording_point method) compute_mesh() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) compute_PSA_anisotropic_footprint() (nrv.fmod.recording_point method) compute_PSA_isotropic_footprint() (nrv.fmod.recording_point method) compute_res() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) compute_stimulus_cost() (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.stim_energy_CE method) compute_vext() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) COMSOL_model (class in nrv.fmod.FEM) concatenate() (nrv.utils.stimulus method) constant() (nrv.utils.stimulus method) context_and_cost() (nrv.optim.Problem method) context_modifier (class in nrv.optim.optim_utils) convert() (in module nrv.utils) copy() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) cost_evaluation (class in nrv.utils) cost_function (class in nrv.optim) cost_position_saver() (in module nrv.optim.optim_utils) costfunction (nrv.optim.Problem property) count_APs() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) count_axon_activation() (nrv.optim.optim_utils.recrutement_count_CE method) count_fascicle_activation() (nrv.optim.optim_utils.recrutement_count_CE method) count_spike() (in module nrv.ui) create_axon_population() (in module nrv.nmod.utils) create_cshape() (in module nrv.utils.geom) create_folder() (in module nrv.backend) create_population() (nrv.nmod.axon_population method) create_population_from_data() (nrv.nmod.axon_population method) create_population_from_stat() (nrv.nmod.axon_population method) CShape (class in nrv.utils.geom) cshape_overlap_checker() (in module nrv.utils.geom) CUFF_electrode (class in nrv.fmod) CUFF_MP_electrode (class in nrv.fmod) D d (nrv.nmod.fascicle property) data (nrv.eit.eit_inverse property) (nrv.eit.pyeit_inverse property) datfile_2_stim() (in module nrv.utils) default() (nrv.backend.NRV_Encoder method) default_PP() (in module nrv.ui) define_circular_contour() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) define_ellipsoid_contour() (nrv.nmod.nerve method) define_length() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) detect_AP_collisions() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) detect_start_extrastim() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) dim (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) display_machine_config() (nrv.backend.nrv_config method) dist_matrix() (in module nrv.nmod.utils) distance_point2line() (in module nrv.utils) distance_point2point() (in module nrv.utils) domain_from_meshfile() (in module nrv.fmod.FEM.fenics_utils) domains_1D (nrv.fmod.FEM.mesh_creator.MshCreator property) (nrv.fmod.FEM.mesh_creator.NerveMshCreator property) domains_2D (nrv.fmod.FEM.mesh_creator.MshCreator property) (nrv.fmod.FEM.mesh_creator.NerveMshCreator property) domains_3D (nrv.fmod.FEM.mesh_creator.MshCreator property) (nrv.fmod.FEM.mesh_creator.NerveMshCreator property) dv_eit() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) dv_eit_normalized() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) dv_eit_pc() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) E e_axis (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) EIT2DProblem (class in nrv.eit) EIT3DProblem (class in nrv.eit) eit_forward (class in nrv.eit) eit_forward_results (class in nrv.eit.results) eit_inverse (class in nrv.eit) eit_results_list (class in nrv.eit.results) electrode (class in nrv.fmod) Ellipse (class in nrv.utils.geom) encode() (nrv.backend.NRV_Encoder method) ENDC (nrv.backend.bcolors attribute) error() (nrv.eit.results.eit_results_list method) eval() (nrv.fmod.FEM.fenics_utils.FEMResults method) expand_pop() (in module nrv.nmod.utils) export() (nrv.fmod.FEM.COMSOL_model method) extra_stim_properties() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) extracel_status() (nrv.backend.NRV_simulable method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) extracellular_context (class in nrv.fmod) F f_axis (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) f_material (class in nrv.fmod.FEM.fenics_utils) FAIL (nrv.backend.bcolors attribute) fail_results (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) fasc_geometries (nrv.nmod.results.nerve_results property) fasc_properties (nrv.nmod.results.nerve_results property) fascicle (class in nrv.nmod) fascicle_keys (nrv.nmod.results.nerve_results property) fascicle_results (class in nrv.nmod.results) fascicular_state() (in module nrv.ui) FEM_electrode (class in nrv.fmod) FEM_model (class in nrv.fmod.FEM) fem_res_file (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) FEM_stimulation (class in nrv.fmod) FEMParameters (class in nrv.fmod.FEM.fenics_utils) FEMResults (class in nrv.fmod.FEM.fenics_utils) FEMSimulation (class in nrv.fmod.FEM.fenics_utils) fenics_material (class in nrv.fmod.FEM.fenics_utils) FENICS_model (class in nrv.fmod.FEM) fig (nrv.eit.utils.Figure_elec property) Figure_elec (class in nrv.eit.utils) fill() (nrv.nmod.fascicle method) fill_area_with_axons() (in module nrv.nmod.utils) fill_between_all_elec() (in module nrv.eit.utils) (nrv.eit.utils.Figure_elec method) fill_geometry() (nrv.nmod.axon_population method) fill_with_population() (nrv.nmod.fascicle method) filter_freq() (in module nrv.ui) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) find_central_index() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) find_central_node_coordinate() (nrv.nmod.results.myelinated_results method) find_central_node_index() (in module nrv.ui) findbestpart() (nrv.optim.optim_utils.optim_results method) firing_threshold_from_axon() (in module nrv.ui) firing_threshold_point_source() (in module nrv.ui) fit_circular_contour() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) fragment() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) from_nrv_unit() (in module nrv.utils) fromat_data() (nrv.eit.eit_inverse method) (nrv.eit.pyeit_inverse method) fromkeys() (nrv.backend.NRV_results class method) (nrv.backend.sim_results class method) (nrv.eit.results.eit_forward_results class method) (nrv.eit.results.eit_results_list class method) (nrv.nmod.results.axon_results class method) (nrv.nmod.results.fascicle_results class method) (nrv.nmod.results.myelinated_results class method) (nrv.nmod.results.nerve_results class method) (nrv.nmod.results.unmyelinated_results class method) (nrv.optim.optim_utils.optim_results class method) function_1D (class in nrv.utils) function_2D (class in nrv.utils) function_ND (class in nrv.utils) function_to_str() (in module nrv.backend) G gate (class in nrv.utils) gather_all_recordings() (nrv.fmod.recorder method) gaussian (class in nrv.utils) gen_fig_elec() (in module nrv.eit.utils) gen_idx_arange() (in module nrv.eit.utils) generate() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.nmod.axon_population method) generate_axon() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) generate_axon_from_results() (in module nrv.ui) generate_from_deprected_fascicle() (nrv.nmod.axon_population method) generate_ligned_NoR_position() (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) generate_new_fname() (in module nrv.backend) generate_NoR_position_from_data() (nrv.nmod.axon_population method) generate_random_NoR_position() (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) generate_results() (in module nrv.backend) geom (nrv.nmod.fascicle property) (nrv.nmod.results.fascicle_results property) get() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) get_1dpoly_intersec() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_acap_mask() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) get_acap_ppt() (nrv.eit.results.eit_results_list method) get_acap_t_ppt() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) get_acap_v_ppt() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) get_AP_downward_len() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_AP_upward_len() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_avg_AP_speed() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_axon_results() (nrv.nmod.results.nerve_results method) get_axon_xrec() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_axons() (nrv.nmod.results.fascicle_results method) get_axons_key() (nrv.nmod.results.fascicle_results method) get_axons_parameters() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) get_block_summary() (nrv.nmod.results.fascicle_results method) get_block_summary_axons() (nrv.nmod.results.fascicle_results method) get_cap_i_t() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) get_cap_i_t_lim() (nrv.eit.results.eit_results_list method) get_cap_mask() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) get_cap_res() (nrv.eit.results.eit_results_list method) get_circular_contour() (in module nrv.nmod.utils) (nrv.nmod.fascicle method) (nrv.nmod.nerve method) get_collision_pts() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_cshape_bbox() (in module nrv.utils.geom) get_domain_potential() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_dv_from_df() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) get_electrodes_footprints_on_axon() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_electrodes_footprints_on_axons() (nrv.nmod.fascicle method) get_equal_timing_copies() (in module nrv.utils) get_faces() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_fascicle_key() (nrv.nmod.results.nerve_results method) get_fascicle_results() (nrv.nmod.results.nerve_results method) get_fascicles() (nrv.nmod.nerve method) get_fenics_sigma() (nrv.fmod.FEM.fenics_utils.fenics_material method) get_footprint() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) get_gmsh_ncore() (nrv.backend.nrv_parameters method) get_ID() (nrv.fmod.recording_point method) get_ID_number() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) get_idxs() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) get_index_myelinated_sequence() (in module nrv.ui) (nrv.nmod.results.myelinated_results method) get_info() (nrv.eit.EIT2DProblem method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_interAPs_collision() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_ionic_conductance() (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_ionic_current() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_length_from_nodes() (in module nrv.utils) get_mask() (nrv.nmod.axon_population method) get_mat_file_as_dict() (in module nrv.fmod) get_membrane_capacitance() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) get_membrane_complexe_admitance() (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) get_membrane_conductance() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_membrane_conductivity() (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) get_membrane_current() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_membrane_material() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_membrane_voltage() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_mesh_domid() (in module nrv.fmod.FEM.mesh_creator) get_mesh_info() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_meshes() (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FENICS_model method) get_method() (nrv.fmod.recording_point method) get_mixedspace_domain() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_mixedspace_mat_pty() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_MRG_parameters() (in module nrv.utils) get_myelin_capacitance() (nrv.nmod.myelinated method) get_myelin_conductance() (nrv.nmod.myelinated method) get_myelin_properties() (in module nrv.ui) (nrv.nmod.results.myelinated_results method) get_n_ax() (nrv.nmod.nerve method) (nrv.nmod.results.fascicle_results method) get_Nav_values() (nrv.nmod.myelinated method) get_nmod_ncore() (nrv.backend.nrv_parameters method) get_node_physical_id() (in module nrv.fmod.FEM.mesh_creator) get_nproc() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) get_nrv_verbosity() (nrv.backend.nrv_parameters method) get_obj() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_optim_ncore() (nrv.backend.nrv_parameters method) get_parameter() (nrv.fmod.FEM.COMSOL_model method) get_parameters() (nrv.backend.NRV_class method) (nrv.backend.NRV_results method) (nrv.backend.NRV_simulable method) (nrv.backend.sim_results method) (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMResults method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) (nrv.fmod.FEM.fenics_utils.fenics_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.material method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) (nrv.optim.cost_function method) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.context_modifier method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.optim_results method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.optim.optim_utils.stimulus_CM method) (nrv.optim.Optimizer method) (nrv.optim.Problem method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation method) (nrv.utils.function_1D method) (nrv.utils.function_2D method) (nrv.utils.function_ND method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack method) (nrv.utils.nrv_function method) (nrv.utils.nrv_interp method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) (nrv.utils.stimulus method) get_particles_values() (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_particules_values() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_perineurial_thickness() (in module nrv.utils) get_point_inside() (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) get_potentials() (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FENICS_model method) get_ppop_info() (in module nrv.nmod.utils) (nrv.nmod.axon_population method) get_reccap_ppt() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) get_recruited_axons() (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.nerve_results method) get_recruited_axons_greater_than() (nrv.nmod.results.fascicle_results method) get_recruited_axons_lesser_than() (nrv.nmod.results.fascicle_results method) get_res() (nrv.eit.results.eit_results_list method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_results() (nrv.eit.eit_inverse method) (nrv.eit.pyeit_inverse method) get_samples_index() (in module nrv.eit.utils) get_sig_ap() (in module nrv.fmod.FEM.fenics_utils) get_sim_results() (nrv.optim.cost_function method) get_solver_opt() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_space_of_domain() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_spaces_of_ibound() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_start_AP() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_start_APs() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_sub_population() (nrv.nmod.axon_population method) get_surface() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_timers() (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_trace() (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) get_volumes() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_xmax_AP() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_xmin_AP() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) getAPspeed() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) gmsh_autoset() (nrv.backend.nrv_parameters method) goldstein_price (class in nrv.utils) H harmonic_pulse() (nrv.utils.stimulus method) harmonic_stimulus_CM (class in nrv.optim.optim_utils) harmonic_stimulus_with_pw_CM (class in nrv.optim.optim_utils) has_AP_reached_end() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) has_data (nrv.eit.eit_inverse property) (nrv.eit.pyeit_inverse property) has_failed_test (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) has_FEM_extracel (nrv.backend.NRV_simulable property) (nrv.nmod.axon property) (nrv.nmod.fascicle property) (nrv.nmod.myelinated property) (nrv.nmod.nerve property) (nrv.nmod.unmyelinated property) has_fem_res (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) has_geom (nrv.nmod.axon_population property) has_nerve_res (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) has_node_shift (nrv.nmod.axon_population property) has_placed_pop (nrv.nmod.axon_population property) has_pop (nrv.nmod.axon_population property) HEADER (nrv.backend.bcolors attribute) hist() (nrv.nmod.axon_population method) I i_drive (nrv.eit.EIT2DProblem attribute) (nrv.eit.EIT3DProblem attribute) (nrv.eit.eit_forward attribute) i_drive_A (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) i_t_duration() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) Id (class in nrv.utils) iloc (nrv.nmod.axon_population property) import_contour() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) in_tol() (in module nrv.utils) incorporate_nerve_res() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) init_recording() (nrv.fmod.recording_point method) init_recordings() (nrv.fmod.recorder method) init_reporter() (in module nrv.backend) inj_protocol (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) insert_I_Clamp() (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) insert_I_Clamp_node() (nrv.nmod.myelinated method) insert_samples() (nrv.utils.stimulus method) insert_V_Clamp() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) insert_V_Clamp_node() (nrv.nmod.myelinated method) integrate() (nrv.utils.stimulus method) interpolate() (in module nrv.optim.optim_utils) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.stimulus_CM method) interpolate_amp() (in module nrv.optim.optim_utils) interpolate_Npts() (in module nrv.optim.optim_utils) intracel_status() (nrv.backend.NRV_simulable method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) is_alone (nrv.backend.nrv_parameters property) is_analytical_electrode() (in module nrv.fmod) is_analytical_extra_stim() (in module nrv.fmod) is_AP_in_timeframe() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) is_blocked() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) is_CUFF_electrode() (in module nrv.fmod) is_dummy (nrv.backend.NRV_results property) (nrv.backend.sim_results property) (nrv.nmod.results.axon_results property) (nrv.nmod.results.fascicle_results property) (nrv.nmod.results.myelinated_results property) (nrv.nmod.results.nerve_results property) (nrv.nmod.results.unmyelinated_results property) (nrv.optim.optim_utils.optim_results property) is_empty (nrv.backend.NRV_results property) (nrv.backend.sim_results property) (nrv.nmod.results.axon_results property) (nrv.nmod.results.fascicle_results property) (nrv.nmod.results.myelinated_results property) (nrv.nmod.results.nerve_results property) (nrv.nmod.results.unmyelinated_results property) (nrv.optim.optim_utils.optim_results property) is_empty() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.recorder method) (nrv.fmod.stimulation method) is_empty_iterable() (in module nrv.backend) is_extra_stim() (in module nrv.fmod) is_f_mat() (in module nrv.fmod.FEM.fenics_utils) is_FEM_electrode() (in module nrv.fmod) is_FEM_extra_stim() (in module nrv.fmod) is_func (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) is_function_defined() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) is_inside() (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) is_isotropic() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) is_iterable() (in module nrv.backend) is_lay_mat() (in module nrv.fmod.FEM.fenics_utils) is_LIFE_electrode() (in module nrv.fmod) is_m_proc_func (nrv.optim.cost_function property) is_mat() (in module nrv.fmod) is_MshCreator() (in module nrv.fmod.FEM.mesh_creator) is_multi_freqs (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) is_multi_patern (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) is_NerveMshCreator() (in module nrv.fmod.FEM.mesh_creator) is_NRV_class() (in module nrv.backend) is_NRV_class_dict() (in module nrv.backend) is_NRV_class_list() (in module nrv.backend) is_NRV_dict() (in module nrv.backend) is_NRV_dict_dict() (in module nrv.backend) is_NRV_dict_list() (in module nrv.backend) is_NRV_object_dict() (in module nrv.backend) is_NRV_simulable() (in module nrv.backend) is_permitive() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) is_recorder() (in module nrv.fmod) is_recording_point() (in module nrv.fmod) is_recruited() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) is_rot (nrv.utils.geom.Circle property) (nrv.utils.geom.Ellipse property) is_sim_res() (in module nrv.fmod.FEM.fenics_utils) is_stabilized() (nrv.optim.optim_utils.optim_results method) is_stim() (in module nrv.utils) item_separator (nrv.backend.NRV_Encoder attribute) items() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) iterencode() (nrv.backend.NRV_Encoder method) ix_() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) J json_dump() (in module nrv.backend) json_load() (in module nrv.backend) K key_separator (nrv.backend.NRV_Encoder attribute) keys() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) L layered_material (class in nrv.fmod.FEM.fenics_utils) len() (nrv.utils.stimulus method) LIFE_electrode (class in nrv.fmod) linfit_AP() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) load() (nrv.backend.NRV_class method) (nrv.backend.nrv_parameters method) (nrv.backend.NRV_results method) (nrv.backend.NRV_simulable method) (nrv.backend.sim_results method) (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMResults method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) (nrv.fmod.FEM.fenics_utils.fenics_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.material method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) (nrv.optim.cost_function method) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.context_modifier method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.optim_results method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.optim.optim_utils.stimulus_CM method) (nrv.optim.Optimizer method) (nrv.optim.Problem method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation method) (nrv.utils.function_1D method) (nrv.utils.function_2D method) (nrv.utils.function_ND method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack method) (nrv.utils.nrv_function method) (nrv.utils.nrv_interp method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) (nrv.utils.stimulus method) load_any() (in module nrv.backend) load_any_electrode() (in module nrv.fmod) load_any_extracel_context() (in module nrv.fmod) load_axon() (in module nrv.ui) (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) load_axon_population() (in module nrv.nmod.utils) load_dxf_file() (in module nrv.backend) load_electrode() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) load_extracel_context() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) load_f_material() (in module nrv.fmod.FEM.fenics_utils) load_fascicle() (in module nrv.ui) load_from_parameters() (nrv.fmod.FEM.FENICS_model method) load_material() (in module nrv.fmod) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) load_nerve() (in module nrv.ui) load_recorder() (nrv.fmod.recorder method) load_recording_point() (nrv.fmod.recording_point method) load_res() (in module nrv.eit.results) load_sim_result() (nrv.fmod.FEM.fenics_utils.FEMResults method) load_SimParameters() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) load_stat() (in module nrv.nmod.utils) load_stimulus() (nrv.utils.stimulus method) ls_axons_results() (in module nrv.ui) ls_csv() (in module nrv.ui) M mat_from_csv() (in module nrv.fmod.FEM.fenics_utils) mat_from_interp() (in module nrv.fmod.FEM.fenics_utils) material (class in nrv.fmod) max_spike_position() (in module nrv.ui) mean() (nrv.eit.results.eit_results_list method) membrane_capacitance_from_model() (in module nrv.utils) mesh_from_electrode() (in module nrv.ui) mesh_from_extracellular_context() (in module nrv.ui) mesh_from_fascicle() (in module nrv.ui) mesh_from_nerve() (in module nrv.ui) MeshCallBack (class in nrv.utils) minimize() (nrv.optim.Optimizer method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) module nrv nrv.backend nrv.eit nrv.eit.results nrv.eit.utils nrv.fmod nrv.fmod.FEM nrv.fmod.FEM.fenics_utils nrv.fmod.FEM.mesh_creator nrv.nmod nrv.nmod.results nrv.nmod.utils nrv.optim nrv.optim.optim_utils nrv.ui nrv.utils nrv.utils.geom mro() (nrv.backend.NRV_singleton method) MshCreator (class in nrv.fmod.FEM.mesh_creator) myelinated (class in nrv.nmod) myelinated_results (class in nrv.nmod.results) N N (nrv.nmod.fascicle property) n_ax (nrv.nmod.axon_population property) (nrv.nmod.fascicle property) (nrv.nmod.nerve property) (nrv.nmod.results.fascicle_results property) (nrv.nmod.results.nerve_results property) n_core (nrv.fmod.FEM.mesh_creator.MshCreator property) (nrv.fmod.FEM.mesh_creator.NerveMshCreator property) n_domains (nrv.fmod.FEM.mesh_creator.MshCreator property) (nrv.fmod.FEM.mesh_creator.NerveMshCreator property) n_e (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) N_electrode (nrv.fmod.FEM.FENICS_model property) n_f (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) n_fasc (nrv.nmod.nerve property) (nrv.nmod.results.nerve_results property) N_fascicle (nrv.fmod.FEM.FENICS_model property) n_gon (nrv.utils.geom.Polygon property) n_mask (nrv.nmod.axon_population property) n_nodes (nrv.nmod.myelinated property) n_p (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) n_t (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) ncore_autoset() (in module nrv.backend) nearest_greater_idx() (in module nrv.utils) nearest_idx() (in module nrv.utils) nerve (class in nrv.nmod) nerve_mesh_file (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) nerve_res_file (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) nerve_results (class in nrv.nmod.results) NerveMshCreator (class in nrv.fmod.FEM.mesh_creator) nmod_autoset() (nrv.backend.nrv_parameters method) NodeD_interpol() (in module nrv.fmod) nrv module nrv.backend module nrv.eit module nrv.eit.results module nrv.eit.utils module nrv.fmod module nrv.fmod.FEM module nrv.fmod.FEM.fenics_utils module nrv.fmod.FEM.mesh_creator module nrv.nmod module nrv.nmod.results module nrv.nmod.utils module nrv.optim module nrv.optim.optim_utils module nrv.ui module nrv.utils module nrv.utils.geom module NRV_class (class in nrv.backend) nrv_config (class in nrv.backend) NRV_Encoder (class in nrv.backend) nrv_function (class in nrv.utils) nrv_interp (class in nrv.utils) nrv_parameters (class in nrv.backend) NRV_results (class in nrv.backend) NRV_simulable (class in nrv.backend) NRV_singleton (class in nrv.backend) O OKBLUE (nrv.backend.bcolors attribute) OKCYAN (nrv.backend.bcolors attribute) OKGREEN (nrv.backend.bcolors attribute) optim_autoset() (nrv.backend.nrv_parameters method) optim_results (class in nrv.optim.optim_utils) Optimizer (class in nrv.optim) optimizer (nrv.optim.Problem property) optmizer (nrv.optim.Problem property) P parameter_model() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.LIFE_electrode method) pass_debug_info() (in module nrv.backend) pass_info() (in module nrv.backend) perimeter (nrv.utils.geom.Circle property) (nrv.utils.geom.CShape property) (nrv.utils.geom.Ellipse property) (nrv.utils.geom.Polygon property) place_all() (nrv.nmod.utils.Placer method) place_population() (nrv.nmod.axon_population method) place_population_from_data() (nrv.nmod.axon_population method) placed_id() (nrv.nmod.axon_population method) Placer (class in nrv.nmod.utils) plot() (nrv.eit.eit_inverse method) (nrv.eit.pyeit_inverse method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) (nrv.utils.stimulus method) plot_all_elec() (in module nrv.eit.utils) (nrv.eit.utils.Figure_elec method) plot_array() (in module nrv.eit.utils) plot_bbox() (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) plot_block_summary() (nrv.nmod.results.fascicle_results method) plot_cost_history() (nrv.optim.optim_utils.optim_results method) plot_fasc_state() (in module nrv.ui) plot_Nav_states() (in module nrv.ui) (nrv.nmod.results.myelinated_results method) plot_nerve_nor() (in module nrv.eit.utils) plot_population() (in module nrv.nmod.utils) plot_recruited_fibers() (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.nerve_results method) plot_stim() (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) plot_x() (nrv.nmod.fascicle method) plot_x_t() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) plot_x_t_all_seq() (nrv.nmod.results.myelinated_results method) point_source_electrode (class in nrv.fmod) Polygon (class in nrv.utils.geom) pop() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) popitem() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) print_default_nrv_unit() (in module nrv.utils) print_mixedspace_domain() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) print_mixedspace_mat_pty() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) Problem (class in nrv.optim) proc_label (nrv.backend.nrv_parameters property) progression_popup() (in module nrv.backend) prompt_debug() (in module nrv.backend) PSO_optimizer (class in nrv.optim) pulse() (nrv.utils.stimulus method) pyeit_inverse (class in nrv.eit) R r (nrv.utils.geom.Circle property) (nrv.utils.geom.Ellipse property) r_axis (nrv.eit.results.eit_results_list property) radius (nrv.nmod.fascicle property) ramp() (nrv.utils.stimulus method) ramp_lim() (nrv.utils.stimulus method) raster_count_CE (class in nrv.optim.optim_utils) raster_plot() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) rasterize() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) rastrigin (class in nrv.utils) read_gmsh() (in module nrv.fmod.FEM.fenics_utils) rec_status() (nrv.backend.NRV_simulable method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) recorder (class in nrv.fmod) recording_point (class in nrv.fmod) recrutement_count_CE (class in nrv.optim.optim_utils) refine_entities() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) refine_min() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) refine_threshold() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) refinement_callback() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) remove_axons_electrode_overlap() (nrv.nmod.fascicle method) remove_axons_size_threshold() (nrv.nmod.fascicle method) remove_collision() (in module nrv.nmod.utils) remove_fascicles() (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_stimulation method) remove_key() (in module nrv.ui) (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) remove_myelinated_axons() (nrv.nmod.fascicle method) remove_non_NoR_zones() (in module nrv.ui) remove_outlier_axons() (in module nrv.nmod.utils) remove_raster_artifacts() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) remove_sim_masks() (nrv.nmod.fascicle method) remove_unmyelinated_axons() (nrv.nmod.fascicle method) rerun_failed_steps() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) res_argwhere() (nrv.eit.results.eit_results_list method) res_list_from_labels() (in module nrv.eit.results) res_where() (nrv.eit.results.eit_results_list method) reset_electrodes() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) reset_parameters() (nrv.fmod.FEM.FENICS_model method) reset_recording() (nrv.fmod.recording_point method) reset_recordings() (nrv.fmod.recorder method) reset_stimuli() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) reshape_axon() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) reshape_fascicle() (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_stimulation method) reshape_geometry() (nrv.nmod.axon_population method) reshape_nerve() (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_stimulation method) reshape_outerBox() (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_stimulation method) rise_error() (in module nrv.backend) rise_warning() (in module nrv.backend) rm_file() (in module nrv.ui) rm_sim_dir() (in module nrv.ui) rm_sim_dir_from_results() (in module nrv.ui) rmv_ext() (in module nrv.backend) rmv_keys() (in module nrv.ui) rosenbock (class in nrv.utils) rot_mat (nrv.utils.geom.Circle property) (nrv.utils.geom.Ellipse property) rot_mat_inverse (nrv.utils.geom.Circle property) (nrv.utils.geom.Ellipse property) rotate() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) rotate_axons() (nrv.nmod.fascicle method) rotate_fascicle() (nrv.nmod.fascicle method) run_all_fem() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) run_and_savefem() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) run_fem() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) run_fem_1core() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) run_model() (nrv.fmod.FEM_stimulation method) S sample_g_mem() (in module nrv.ui) sample_keys() (in module nrv.ui) sample_nerve_results() (in module nrv.eit.utils) save() (nrv.backend.NRV_class method) (nrv.backend.nrv_parameters method) (nrv.backend.NRV_results method) (nrv.backend.NRV_simulable method) (nrv.backend.sim_results method) (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMResults method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) (nrv.fmod.FEM.fenics_utils.fenics_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.material method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) (nrv.optim.cost_function method) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.context_modifier method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.optim_results method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.optim.optim_utils.stimulus_CM method) (nrv.optim.Optimizer method) (nrv.optim.Problem method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation method) (nrv.utils.function_1D method) (nrv.utils.function_2D method) (nrv.utils.function_ND method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack method) (nrv.utils.nrv_function method) (nrv.utils.nrv_interp method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) (nrv.utils.stimulus method) save_axon() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) save_axon_population() (in module nrv.nmod.utils) save_electrode() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) save_extracel_context() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) save_geom() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) save_material() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) save_path (nrv.nmod.fascicle attribute) save_recorder() (nrv.fmod.recorder method) save_recording_point() (nrv.fmod.recording_point method) save_results() (nrv.fmod.FEM.FENICS_model method) save_sim_res_list() (in module nrv.fmod.FEM.fenics_utils) save_sim_result() (nrv.fmod.FEM.fenics_utils.FEMResults method) save_SimParameters() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) save_stimulus() (nrv.utils.stimulus method) scale_axs() (in module nrv.eit.utils) (nrv.eit.utils.Figure_elec method) sci_round() (in module nrv.utils) scipy_optimizer (class in nrv.optim) search_threshold_dispatcher() (in module nrv.ui) set_anisotropic_conductivity() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_attributes() (in module nrv.backend) set_axons_parameters() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) set_chara_blen() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) set_common_time_series() (in module nrv.utils) set_conductance_recorders() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) set_conductivity_function() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) set_context_modifier() (nrv.optim.cost_function method) set_cost_evaluation() (nrv.optim.cost_function method) set_electrodes_footprints() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) set_footprint() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) set_frequency() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_function() (nrv.utils.MeshCallBack method) set_geometry() (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) set_gmsh_ncore() (nrv.backend.nrv_parameters method) set_gnd_facet() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) set_ID() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) set_ID_number() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) set_inversor() (nrv.eit.pyeit_inverse method) set_ionic_current_recorders() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) set_isotropic_conductivity() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_log_level() (in module nrv.backend) set_Markov_Nav() (nrv.nmod.myelinated method) set_materials() (nrv.fmod.FEM.FENICS_model method) set_membrane_current_recorders() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) set_membrane_voltage_recorders() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) set_mesh_file() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) set_method() (nrv.fmod.recording_point method) set_multiprocess_type() (nrv.optim.Problem method) set_n_proc() (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM_stimulation method) set_name() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_Nav_recorders() (nrv.nmod.myelinated method) set_ncore() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) set_ncore_gmsh() (nrv.eit.EIT2DProblem method) set_ncores() (nrv.backend.nrv_parameters method) set_nmod_ncore() (nrv.backend.nrv_parameters method) set_nrv_verbosity() (nrv.backend.nrv_parameters method) set_optim_ncore() (nrv.backend.nrv_parameters method) set_parameter() (nrv.fmod.FEM.COMSOL_model method) set_parameters() (nrv.backend.NRV_class method) (nrv.backend.NRV_results method) (nrv.backend.NRV_simulable method) (nrv.backend.sim_results method) (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMResults method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) (nrv.fmod.FEM.fenics_utils.fenics_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.material method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) (nrv.optim.cost_function method) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.context_modifier method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.optim_results method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.optim.optim_utils.stimulus_CM method) (nrv.optim.Optimizer method) (nrv.optim.Problem method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation method) (nrv.utils.function_1D method) (nrv.utils.function_2D method) (nrv.utils.function_ND method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack method) (nrv.utils.nrv_function method) (nrv.utils.nrv_interp method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) (nrv.utils.stimulus method) set_particules_values_recorders() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) set_permitivity() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_recording_point() (nrv.fmod.recorder method) set_recording_volume() (nrv.fmod.recorder method) set_recording_yplane() (nrv.fmod.recorder method) set_recording_zplane() (nrv.fmod.recorder method) set_res() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) set_result_merging() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) set_sim_result() (nrv.fmod.FEM.fenics_utils.FEMResults method) set_solver_opt() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) set_source() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_static_context() (nrv.optim.cost_function method) set_time() (nrv.fmod.recorder method) set_verbosity() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) setdefault() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) setup_FEM() (nrv.fmod.FEM_stimulation method) setup_sim() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) setup_simulations() (nrv.fmod.FEM.FENICS_model method) shape (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) shp_poly (nrv.utils.geom.Polygon property) shut_recorder_down() (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) sigma (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.fenics_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) (nrv.fmod.material property) sigma_fen (nrv.fmod.FEM.fenics_utils.fenics_material property) sigma_func (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) sigma_xx (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) (nrv.fmod.material property) sigma_yy (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) (nrv.fmod.material property) sigma_zz (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) (nrv.fmod.material property) sim_axon() (nrv.nmod.fascicle method) sim_results (class in nrv.backend) simulable() (in module nrv.backend) simulate() (nrv.backend.NRV_simulable method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) simulate_context() (nrv.optim.cost_function method) simulate_eit() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) simulate_nerve() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) simulate_recording() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) sinus() (nrv.utils.stimulus method) snap_time() (nrv.utils.stimulus method) snsplot() (nrv.eit.utils.Figure_elec method) solve() (nrv.eit.eit_inverse method) (nrv.eit.pyeit_inverse method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) solve_and_save_sim() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) solver_info() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) sort() (nrv.utils.stimulus method) speed() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) sphere (class in nrv.utils) split_APs() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) square() (nrv.utils.stimulus method) stabilization_it() (nrv.optim.optim_utils.optim_results method) std() (nrv.eit.results.eit_results_list method) stim_energy_CE (class in nrv.optim.optim_utils) stimulation (class in nrv.fmod) stimulus (class in nrv.utils) stimulus_CM (class in nrv.optim.optim_utils) stimulus_generator() (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.stimulus_CM method) str_to_function() (in module nrv.backend) synchronise_stimuli() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) synchronize_times() (in module nrv.eit.results) T t() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) t_axis (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) thr_window() (in module nrv.eit.utils) timers_dict (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) to_nrv_unit() (in module nrv.utils) to_save (nrv.backend.NRV_results property) (nrv.backend.sim_results property) (nrv.nmod.results.axon_results property) (nrv.nmod.results.fascicle_results property) (nrv.nmod.results.myelinated_results property) (nrv.nmod.results.nerve_results property) (nrv.nmod.results.unmyelinated_results property) (nrv.optim.optim_utils.optim_results property) topology() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) translate() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon_population method) (nrv.nmod.fascicle method) (nrv.utils.geom.Circle method) (nrv.utils.geom.CShape method) (nrv.utils.geom.Ellipse method) (nrv.utils.geom.Polygon method) translate_axons() (nrv.nmod.fascicle method) translate_fascicle() (nrv.nmod.fascicle method) U UNDERLINE (nrv.backend.bcolors attribute) unmyelinated (class in nrv.nmod) unmyelinated_results (class in nrv.nmod.results) update() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) update_acap_inde_t_ppt() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) update_failed_results() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) update_fascicle_file() (in module nrv.ui) update_fenics_sigma() (nrv.fmod.FEM.fenics_utils.fenics_material method) update_interpolator() (nrv.utils.nrv_interp method) update_mat() (nrv.fmod.FEM.fenics_utils.fenics_material method) update_mesh() (nrv.eit.pyeit_inverse method) use_backup (nrv.eit.EIT2DProblem attribute) (nrv.eit.EIT3DProblem attribute) (nrv.eit.eit_forward attribute) V v_0() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) v_eit() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) v_eit_idx() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) v_eit_interp (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) V_from_meshfile() (in module nrv.fmod.FEM.fenics_utils) v_rec() (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) v_rec_interp (nrv.eit.results.eit_forward_results property) (nrv.eit.results.eit_results_list property) v_shape() (nrv.eit.EIT2DProblem method) (nrv.eit.EIT3DProblem method) (nrv.eit.eit_forward method) valid_mask_labels() (nrv.nmod.axon_population method) values() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.results.eit_forward_results method) (nrv.eit.results.eit_results_list method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) vector (nrv.fmod.FEM.fenics_utils.FEMResults property) verbose (nrv.nmod.fascicle attribute) visualize() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) visualize_mesh() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) vmem_plot() (in module nrv.ui) W WARNING (nrv.backend.bcolors attribute) X x (nrv.utils.geom.Circle property) (nrv.utils.geom.CShape property) (nrv.utils.geom.Ellipse property) (nrv.utils.geom.Polygon property) x_bounds_fem (nrv.eit.EIT2DProblem property) (nrv.eit.EIT3DProblem property) (nrv.eit.eit_forward property) Y y (nrv.nmod.fascicle property) (nrv.utils.geom.Circle property) (nrv.utils.geom.CShape property) (nrv.utils.geom.Ellipse property) (nrv.utils.geom.Polygon property) y_grav_center (nrv.nmod.fascicle property) Z z (nrv.nmod.fascicle property) (nrv.utils.geom.Circle property) (nrv.utils.geom.CShape property) (nrv.utils.geom.Ellipse property) (nrv.utils.geom.Polygon property) z_grav_center (nrv.nmod.fascicle property)