axon_population

class nrv.nmod.axon_population(**kwgs)

Instance of an axon population.

Attributes

axon_population.axon_pop	Tabular representation of the stored axon population.
axon_population.check_placement	Check whether placed members are still inside the geometry.
axon_population.has_geom	True if the instance has a geometry
axon_population.has_node_shift	Whether node-of-Ranvier shifts are available in the population table.
axon_population.has_placed_pop	True if the instance has an population with fixed position for each member
axon_population.has_pop	True if the instance has an population
axon_population.iloc	Position-based indexer of the population table.
axon_population.loc	Label-based indexer of the population table.
axon_population.n_ax	Number of axons stored in the population.
axon_population.n_mask	number of mask added to the population

Methods

axon_population.__init__(**kwgs)	Initialize an axon-population container and optionally generate its content.
axon_population.add_mask(data[, label, ...])	Add a mask on the population
axon_population.clear_geometry()	Remove the geometry currently attached to the population.
axon_population.clear_masks([mask_labels])	Delete one or several mask
axon_population.clear_population()	Delete the current population
axon_population.clear_population_placement()	Reset the placement of the population
axon_population.create_population([data, ...])	Creat an placed axon population
axon_population.create_population_from_data(data)	create the population directely from the values
axon_population.create_population_from_stat(n_ax)	Create a virtual population of axons (no Neuron implementation, axon class not called) of a controled number, with controlled statistics.
axon_population.fill_geometry([data, n_ax, ...])	Fill a geometricaly defined contour with axons
axon_population.generate([geometry, center, ...])	Generate the complete geometry and/or axon population and placement.
axon_population.generate_NoR_position_from_data(...)	Generates Node of Ranvier shifts to aligned a node of each axon to x postition.
axon_population.generate_from_deprected_fascicle(key_dic)	Generate the population from the data saved in a deprecated fascicle file.
axon_population.generate_ligned_NoR_position([x])	Generates Node of Ranvier shifts to aligned a node of each axon to x postition.
axon_population.generate_random_NoR_position()	Generates radom Node of Ranvier shifts to prevent from axons with the same diamters to be aligned.
axon_population.get_mask([expr, ...])	Get a population mask from an expression or a list of labels.
axon_population.get_parameters()	Generic method returning all the atributes of an NRV_class instance
axon_population.get_ppop_info([verbose])	Compute placement statistics for the current axon population.
axon_population.get_sub_population([expr, ...])	Get a sub population from an expression or a list of labels.
axon_population.hist(axes[, expr, ...])	Plot an histogram of axon diamters in the population
axon_population.load(data[, blacklist])	Generic loading method for NRV_class instance
axon_population.place_population([pos, ...])	Place the population.
axon_population.place_population_from_data(pos)	_summary_
axon_population.placed_id()	Assign consecutive placement identifiers to placed members.
axon_population.plot(axes[, expr, ...])	Plot the population geometry and placed axons in the transverse plane.
axon_population.reshape_geometry([geometry, ...])	Update the population geometry while reusing unchanged geometry parameters.
axon_population.rotate(angle[, with_geom, ...])	Rotate the population and/or its geometry
axon_population.save([save, fname, blacklist])	Generic saving method for NRV_class instance.
axon_population.set_geometry([geometry, ...])	Set the geometry of the population
axon_population.set_parameters(**kawrgs)	Generic method to set any attribute of NRV_class instance
axon_population.translate(y, z[, with_geom, ...])	Translate the population and/or its geometry
axon_population.valid_mask_labels([mask_labels])	Keep only mask labels that exist in the population.