Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W _ __init__() (nrv.backend.bcolors method) (nrv.backend.Mcore_handler method) (nrv.backend.NRV_class method) (nrv.backend.nrv_config method) (nrv.backend.NRV_Encoder method) (nrv.backend.nrv_parameters method) (nrv.backend.NRV_results method) (nrv.backend.NRV_simulable method) (nrv.backend.NRV_singleton method) (nrv.backend.pbar method) (nrv.backend.sim_results method) (nrv.eit.eit_forward method) (nrv.eit.eit_inverse method) (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMResults method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) (nrv.fmod.FEM.fenics_utils.fenics_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.material method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) (nrv.optim.cost_function method) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.context_modifier method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.optim_results method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.optim.optim_utils.stimulus_CM method) (nrv.optim.Optimizer method) (nrv.optim.Problem method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation method) (nrv.utils.function_1D method) (nrv.utils.function_2D method) (nrv.utils.function_ND method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack method) (nrv.utils.nrv_function method) (nrv.utils.nrv_interp method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) (nrv.utils.stimulus method) A A (nrv.nmod.fascicle property) ackley (class in nrv.utils) add_axon() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_axon_contribution() (nrv.fmod.recorder method) (nrv.fmod.recording_point method) add_boundary() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) add_box() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_cone() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_CUFF() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_CUFF_MEA() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_CUFF_MP() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_cylinder() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_domain() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) add_domains() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_electrode() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) add_fascicle() (nrv.nmod.nerve method) add_filter() (nrv.optim.optim_utils.optim_results method) add_inboundary() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) add_injection() (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) add_LIFE() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_line() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_n() (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) add_patern() (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) add_point() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) add_recording() (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) add_recording_point() (nrv.fmod.recorder method) aline_V() (nrv.fmod.FEM.fenics_utils.FEMResults method) AP_detection() (in module nrv.ui) append() (nrv.utils.stimulus method) APs_in_timeframe() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) APs_reached_end() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) attach_extracellular_recorder() (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) attach_extracellular_stimulation() (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) autoset_optimizer() (nrv.optim.Problem method) axon (class in nrv.nmod) axon_AP_threshold() (in module nrv.ui) axon_block_threshold() (in module nrv.ui) axon_packer() (in module nrv.nmod) axon_results (class in nrv.nmod.results) axon_state() (in module nrv.ui) axons_type (nrv.nmod.results.nerve_results property) B bcolors (class in nrv.backend) beale (class in nrv.utils) biphasic_pulse() (nrv.utils.stimulus method) biphasic_stimulus_CM (class in nrv.optim.optim_utils) block() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) block_summary() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) blocking_threshold_from_axon() (in module nrv.ui) blocking_threshold_point_source() (in module nrv.ui) BOLD (nrv.backend.bcolors attribute) booth (class in nrv.utils) build_and_mesh() (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) bukin6 (class in nrv.utils) C call_method() (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation static method) (nrv.utils.function_1D method) (nrv.utils.function_2D static method) (nrv.utils.function_ND static method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack static method) (nrv.utils.nrv_function static method) (nrv.utils.nrv_interp static method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) CAP_time_detection() (in module nrv.ui) change_electrode_id() (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) change_stimulus_from_electrode() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) charge_quantity_CE (class in nrv.optim.optim_utils) check_electrodes_overlap() (in module nrv.fmod) check_function_kwargs() (in module nrv.backend) check_json_fname() (in module nrv.backend) check_sim_dom() (in module nrv.fmod.FEM) check_test_AP() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) clear() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) (nrv.fmod.FEM.COMSOL_model method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) clear_context() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) clear_electrodes_footprints() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) clear_footprint() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) clear_frequency() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) clear_gmsh() (in module nrv.fmod.FEM.mesh_creator) clear_prompt_line() (in module nrv.backend) close() (nrv.fmod.FEM.COMSOL_model method) closest_point_in_mesh() (in module nrv.fmod.FEM.fenics_utils) colormap_plot() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) compute_best_pos() (nrv.optim.optim_utils.optim_results method) compute_complex_admitance() (in module nrv.utils) compute_conductance() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) compute_cost() (nrv.optim.Problem method) compute_domains() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) compute_effective_conductivity() (in module nrv.fmod) compute_electrodes_footprints() (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) (nrv.nmod.fascicle method) (nrv.nmod.nerve method) compute_entity_domain() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) compute_f_mem() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) compute_field() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) compute_footprint() (nrv.fmod.point_source_electrode method) compute_footprints() (nrv.fmod.recorder method) compute_geo() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) compute_LSA_isotropic_footprint() (nrv.fmod.recording_point method) compute_mesh() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) compute_PSA_anisotropic_footprint() (nrv.fmod.recording_point method) compute_PSA_isotropic_footprint() (nrv.fmod.recording_point method) compute_res() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) compute_stimulus_cost() (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.stim_energy_CE method) compute_vext() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) COMSOL_model (class in nrv.fmod.FEM) concatenate() (nrv.utils.stimulus method) constant() (nrv.utils.stimulus method) context_and_cost() (nrv.optim.Problem method) context_modifier (class in nrv.optim.optim_utils) convert() (in module nrv.utils) copy() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) cost_evaluation (class in nrv.utils) cost_function (class in nrv.optim) cost_function_swarm_from_particle() (in module nrv.optim) cost_position_saver() (in module nrv.optim.optim_utils) costfunction (nrv.optim.Problem property) count_APs() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) count_axon_activation() (nrv.optim.optim_utils.recrutement_count_CE method) count_fascicle_activation() (nrv.optim.optim_utils.recrutement_count_CE method) count_spike() (in module nrv.ui) create_axon_population() (in module nrv.nmod) create_folder() (in module nrv.backend) crop_fascicle() (in module nrv.eit) crop_nerve() (in module nrv.eit) CUFF_electrode (class in nrv.fmod) CUFF_MP_electrode (class in nrv.fmod) D datfile_2_stim() (in module nrv.utils) default() (nrv.backend.NRV_Encoder method) default_PP() (in module nrv.ui) define_circular_contour() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) define_ellipsoid_contour() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) define_length() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) detect_AP_collisions() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) detect_start_extrastim() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) display_machine_config() (nrv.backend.nrv_config method) distance_point2line() (in module nrv.utils) distance_point2point() (in module nrv.utils) do_master_only_work() (nrv.backend.Mcore_handler method) domain_from_meshfile() (in module nrv.fmod.FEM.fenics_utils) domains_1D (nrv.fmod.FEM.mesh_creator.MshCreator property) (nrv.fmod.FEM.mesh_creator.NerveMshCreator property) domains_2D (nrv.fmod.FEM.mesh_creator.MshCreator property) (nrv.fmod.FEM.mesh_creator.NerveMshCreator property) domains_3D (nrv.fmod.FEM.mesh_creator.MshCreator property) (nrv.fmod.FEM.mesh_creator.NerveMshCreator property) E eit_forward (class in nrv.eit) eit_inverse (class in nrv.eit) electrode (class in nrv.fmod) encode() (nrv.backend.NRV_Encoder method) ENDC (nrv.backend.bcolors attribute) eval() (nrv.fmod.FEM.fenics_utils.FEMResults method) expand_pop() (in module nrv.nmod) export() (nrv.fmod.FEM.COMSOL_model method) extra_stim_properties() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) extracel_status() (nrv.backend.NRV_simulable method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) extracellular_context (class in nrv.fmod) F f_material (class in nrv.fmod.FEM.fenics_utils) FAIL (nrv.backend.bcolors attribute) fascicle (class in nrv.nmod) fascicle_keys (nrv.nmod.results.nerve_results property) fascicle_results (class in nrv.nmod.results) fascicular_state() (in module nrv.ui) FEM_electrode (class in nrv.fmod) FEM_model (class in nrv.fmod.FEM) FEM_stimulation (class in nrv.fmod) FEMParameters (class in nrv.fmod.FEM.fenics_utils) FEMResults (class in nrv.fmod.FEM.fenics_utils) FEMSimulation (class in nrv.fmod.FEM.fenics_utils) FENICS_lumped_impedance_model (class in nrv.fmod.FEM) fenics_material (class in nrv.fmod.FEM.fenics_utils) FENICS_model (class in nrv.fmod.FEM) fill() (nrv.nmod.fascicle method) fill_area_with_axons() (in module nrv.nmod) fill_with_population() (nrv.nmod.fascicle method) filter_freq() (in module nrv.ui) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) find_central_node_coordinate() (nrv.nmod.results.myelinated_results method) find_central_node_index() (in module nrv.ui) (nrv.nmod.results.myelinated_results method) findbestpart() (nrv.optim.optim_utils.optim_results method) firing_threshold_from_axon() (in module nrv.ui) firing_threshold_point_source() (in module nrv.ui) fit_circular_contour() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) fit_population_to_size() (nrv.nmod.fascicle method) fragment() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) from_nrv_unit() (in module nrv.utils) fromkeys() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) function_1D (class in nrv.utils) function_2D (class in nrv.utils) function_ND (class in nrv.utils) function_to_str() (in module nrv.backend) G gate (class in nrv.utils) gather_all_recordings() (nrv.fmod.recorder method) gather_jobs() (nrv.backend.Mcore_handler method) gather_jobs_as_array() (nrv.backend.Mcore_handler method) gaussian (class in nrv.utils) generate() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) generate_axon() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) generate_axon_from_results() (in module nrv.ui) generate_ligned_NoR_position() (nrv.nmod.fascicle method) generate_new_fname() (in module nrv.backend) generate_random_NoR_position() (nrv.nmod.fascicle method) generate_results() (in module nrv.backend) get() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) get_1dpoly_intersec() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_AP_downward_len() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_AP_upward_len() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_avg_AP_speed() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_axon_xrec() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_axons() (nrv.nmod.results.fascicle_results method) get_axons_key() (nrv.nmod.results.fascicle_results method) get_axons_parameters() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) get_block_summary() (nrv.nmod.results.fascicle_results method) get_block_summary_axons() (nrv.nmod.results.fascicle_results method) get_circular_contour() (in module nrv.nmod) (nrv.nmod.fascicle method) (nrv.nmod.nerve method) get_collision_pts() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_domain_potential() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_electrodes_footprints_on_axon() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_electrodes_footprints_on_axons() (nrv.nmod.fascicle method) get_equal_timing_copies() (in module nrv.utils) get_faces() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_fascicle_key() (nrv.nmod.results.nerve_results method) get_fascicle_results() (nrv.nmod.results.nerve_results method) get_fascicles() (nrv.nmod.nerve method) get_fenics_sigma() (nrv.fmod.FEM.fenics_utils.fenics_material method) get_footprint() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) get_gmsh_ncore() (nrv.backend.nrv_parameters method) get_ID() (nrv.fmod.recording_point method) get_ID_number() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) get_index_myelinated_sequence() (in module nrv.ui) (nrv.nmod.results.myelinated_results method) get_info() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_interAPs_collision() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_ionic_conductance() (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_ionic_current() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_mat_file_as_dict() (in module nrv.fmod) get_membrane_capacitance() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) get_membrane_complexe_admitance() (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) get_membrane_conductance() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_membrane_conductivity() (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) get_membrane_current() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_membrane_material() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_membrane_voltage() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_mesh_info() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_meshes() (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) get_method() (nrv.fmod.recording_point method) get_mixedspace_domain() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_mixedspace_mat_pty() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_myelin_capacitance() (nrv.nmod.myelinated method) get_myelin_conductance() (nrv.nmod.myelinated method) get_myelin_properties() (in module nrv.ui) (nrv.nmod.results.myelinated_results method) get_n_ax() (nrv.nmod.nerve method) (nrv.nmod.results.fascicle_results method) get_Nav_values() (nrv.nmod.myelinated method) get_nrv_verbosity() (nrv.backend.nrv_parameters method) get_obj() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_parameter() (nrv.fmod.FEM.COMSOL_model method) get_parameters() (nrv.backend.NRV_class method) (nrv.backend.NRV_results method) (nrv.backend.NRV_simulable method) (nrv.backend.sim_results method) (nrv.eit.eit_forward method) (nrv.eit.eit_inverse method) (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMResults method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) (nrv.fmod.FEM.fenics_utils.fenics_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.material method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) (nrv.optim.cost_function method) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.context_modifier method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.optim_results method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.optim.optim_utils.stimulus_CM method) (nrv.optim.Optimizer method) (nrv.optim.Problem method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation method) (nrv.utils.function_1D method) (nrv.utils.function_2D method) (nrv.utils.function_ND method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack method) (nrv.utils.nrv_function method) (nrv.utils.nrv_interp method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) (nrv.utils.stimulus method) get_particles_values() (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_particules_values() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) get_perineurial_thickness() (in module nrv.utils) get_potentials() (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) get_recruited_axons() (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.nerve_results method) get_recruited_axons_greater_than() (nrv.nmod.results.fascicle_results method) get_recruited_axons_lesser_than() (nrv.nmod.results.fascicle_results method) get_res() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_sig_ap() (in module nrv.fmod.FEM.fenics_utils) get_sim_results() (nrv.optim.cost_function method) get_solver_opt() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_space_of_domain() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_spaces_of_ibound() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_start_AP() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_start_APs() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_surface() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_timers() (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) get_volumes() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) get_xmax_AP() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) get_xmin_AP() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) getAPspeed() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) goldstein_price (class in nrv.utils) H harmonic_pulse() (nrv.utils.stimulus method) harmonic_stimulus_CM (class in nrv.optim.optim_utils) harmonic_stimulus_with_pw_CM (class in nrv.optim.optim_utils) has_AP_reached_end() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) HEADER (nrv.backend.bcolors attribute) I Id (class in nrv.utils) import_contour() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) in_tol() (in module nrv.utils) init_recording() (nrv.fmod.recording_point method) init_recordings() (nrv.fmod.recorder method) init_reporter() (in module nrv.backend) inj_mat (nrv.eit.protocol property) (nrv.eit.pyeit_protocol property) insert_I_Clamp() (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) insert_I_Clamp_node() (nrv.nmod.myelinated method) insert_samples() (nrv.utils.stimulus method) insert_V_Clamp() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) insert_V_Clamp_node() (nrv.nmod.myelinated method) instanciate (nrv.backend.pbar attribute) integrate() (nrv.utils.stimulus method) interpolate() (in module nrv.optim.optim_utils) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.stimulus_CM method) interpolate_amp() (in module nrv.optim.optim_utils) interpolate_Npts() (in module nrv.optim.optim_utils) intracel_status() (nrv.backend.NRV_simulable method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) is_alone() (nrv.backend.Mcore_handler method) is_analytical_electrode() (in module nrv.fmod) is_analytical_extra_stim() (in module nrv.fmod) is_AP_in_timeframe() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) is_blocked() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) is_CUFF_electrode() (in module nrv.fmod) is_dummy (nrv.backend.NRV_results property) (nrv.backend.sim_results property) (nrv.nmod.results.axon_results property) (nrv.nmod.results.fascicle_results property) (nrv.nmod.results.myelinated_results property) (nrv.nmod.results.nerve_results property) (nrv.nmod.results.unmyelinated_results property) (nrv.optim.optim_utils.optim_results property) is_empty (nrv.backend.NRV_results property) (nrv.backend.sim_results property) (nrv.nmod.results.axon_results property) (nrv.nmod.results.fascicle_results property) (nrv.nmod.results.myelinated_results property) (nrv.nmod.results.nerve_results property) (nrv.nmod.results.unmyelinated_results property) (nrv.optim.optim_utils.optim_results property) is_empty() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.recorder method) (nrv.fmod.stimulation method) is_empty_iterable() (in module nrv.backend) is_extra_stim() (in module nrv.fmod) is_f_mat() (in module nrv.fmod.FEM.fenics_utils) is_FEM_electrode() (in module nrv.fmod) is_FEM_extra_stim() (in module nrv.fmod) is_func (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) is_function_defined() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) is_isotropic() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) is_iterable() (in module nrv.backend) is_lay_mat() (in module nrv.fmod.FEM.fenics_utils) is_LIFE_electrode() (in module nrv.fmod) is_master() (nrv.backend.Mcore_handler method) is_mat() (in module nrv.fmod) is_MshCreator() (in module nrv.fmod.FEM.mesh_creator) is_NerveMshCreator() (in module nrv.fmod.FEM.mesh_creator) is_NRV_class() (in module nrv.backend) is_NRV_class_dict() (in module nrv.backend) is_NRV_class_list() (in module nrv.backend) is_NRV_dict() (in module nrv.backend) is_NRV_dict_dict() (in module nrv.backend) is_NRV_dict_list() (in module nrv.backend) is_NRV_object_dict() (in module nrv.backend) is_NRV_simulable() (in module nrv.backend) is_permitive() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) is_recorder() (in module nrv.fmod) is_recording_point() (in module nrv.fmod) is_recruited() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) is_sim_res() (in module nrv.fmod.FEM.fenics_utils) is_stabilized() (nrv.optim.optim_utils.optim_results method) is_stim() (in module nrv.utils) item_separator (nrv.backend.NRV_Encoder attribute) items() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) iterencode() (nrv.backend.NRV_Encoder method) J json_dump() (in module nrv.backend) json_load() (in module nrv.backend) K key_separator (nrv.backend.NRV_Encoder attribute) keys() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) L layered_material (class in nrv.fmod.FEM.fenics_utils) len() (nrv.utils.stimulus method) LIFE_electrode (class in nrv.fmod) linfit_AP() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) load() (nrv.backend.NRV_class method) (nrv.backend.nrv_parameters method) (nrv.backend.NRV_results method) (nrv.backend.NRV_simulable method) (nrv.backend.sim_results method) (nrv.eit.eit_forward method) (nrv.eit.eit_inverse method) (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMResults method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) (nrv.fmod.FEM.fenics_utils.fenics_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.material method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) (nrv.optim.cost_function method) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.context_modifier method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.optim_results method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.optim.optim_utils.stimulus_CM method) (nrv.optim.Optimizer method) (nrv.optim.Problem method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation method) (nrv.utils.function_1D method) (nrv.utils.function_2D method) (nrv.utils.function_ND method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack method) (nrv.utils.nrv_function method) (nrv.utils.nrv_interp method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) (nrv.utils.stimulus method) load_any() (in module nrv.backend) load_any_electrode() (in module nrv.fmod) load_any_extracel_context() (in module nrv.fmod) load_axon() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) load_axon_population() (in module nrv.nmod) load_dxf_file() (in module nrv.backend) load_electrode() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) load_extracel_context() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) load_f_material() (in module nrv.fmod.FEM.fenics_utils) load_fascicle_configuration() (nrv.nmod.fascicle method) load_from_parameters() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) load_material() (in module nrv.fmod) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) load_recorder() (nrv.fmod.recorder method) load_recording_point() (nrv.fmod.recording_point method) load_sim_result() (nrv.fmod.FEM.fenics_utils.FEMResults method) load_SimParameters() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) load_stat() (in module nrv.nmod) load_stimulus() (nrv.utils.stimulus method) ls_axons_results() (in module nrv.ui) ls_csv() (in module nrv.ui) M master_broadcasts_array_to_all() (nrv.backend.Mcore_handler method) master_broadcasts_to_all() (nrv.backend.Mcore_handler method) mat_from_csv() (in module nrv.fmod.FEM.fenics_utils) mat_from_interp() (in module nrv.fmod.FEM.fenics_utils) material (class in nrv.fmod) max_spike_position() (in module nrv.ui) Mcore_handler (class in nrv.backend) membrane_capacitance_from_model() (in module nrv.utils) mesh_from_electrode() (in module nrv.ui) mesh_from_extracellular_context() (in module nrv.ui) mesh_from_fascicle() (in module nrv.ui) mesh_from_nerve() (in module nrv.ui) MeshCallBack (class in nrv.utils) minimize() (nrv.optim.Optimizer method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) module nrv nrv.backend nrv.eit nrv.fmod nrv.fmod.FEM nrv.fmod.FEM.fenics_utils nrv.fmod.FEM.mesh_creator nrv.nmod nrv.nmod.results nrv.optim nrv.optim.optim_utils nrv.ui nrv.utils mro() (nrv.backend.NRV_singleton method) MshCreator (class in nrv.fmod.FEM.mesh_creator) mul_n() (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) myelinated (class in nrv.nmod) myelinated_results (class in nrv.nmod.results) N N (nrv.nmod.fascicle property) n_ax (nrv.nmod.fascicle property) (nrv.nmod.nerve property) (nrv.nmod.results.fascicle_results property) (nrv.nmod.results.nerve_results property) n_domains (nrv.fmod.FEM.mesh_creator.MshCreator property) (nrv.fmod.FEM.mesh_creator.NerveMshCreator property) N_electrode (nrv.fmod.FEM.FENICS_lumped_impedance_model property) (nrv.fmod.FEM.FENICS_model property) n_fasc (nrv.nmod.nerve property) (nrv.nmod.results.nerve_results property) N_fascicle (nrv.fmod.FEM.FENICS_lumped_impedance_model property) (nrv.fmod.FEM.FENICS_model property) nearest_greater_idx() (in module nrv.utils) nearest_idx() (in module nrv.utils) nerve (class in nrv.nmod) (nrv.eit.eit_forward property) nerve_results (class in nrv.nmod.results) NerveMshCreator (class in nrv.fmod.FEM.mesh_creator) NodeD_interpol() (in module nrv.fmod) nrv module nrv.backend module nrv.eit module nrv.fmod module nrv.fmod.FEM module nrv.fmod.FEM.fenics_utils module nrv.fmod.FEM.mesh_creator module nrv.nmod module nrv.nmod.results module nrv.optim module nrv.optim.optim_utils module nrv.ui module nrv.utils module NRV_class (class in nrv.backend) nrv_config (class in nrv.backend) NRV_Encoder (class in nrv.backend) nrv_function (class in nrv.utils) nrv_interp (class in nrv.utils) nrv_parameters (class in nrv.backend) NRV_results (class in nrv.backend) NRV_simulable (class in nrv.backend) NRV_singleton (class in nrv.backend) O OKBLUE (nrv.backend.bcolors attribute) OKCYAN (nrv.backend.bcolors attribute) OKGREEN (nrv.backend.bcolors attribute) optim_results (class in nrv.optim.optim_utils) Optimizer (class in nrv.optim) optimizer (nrv.optim.Problem property) optmizer (nrv.optim.Problem property) P para_blocking_threshold() (in module nrv.ui) para_firing_threshold() (in module nrv.ui) parameter_model() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.LIFE_electrode method) pass_debug_info() (in module nrv.backend) pass_info() (in module nrv.backend) pbar (class in nrv.backend) plot() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) (nrv.utils.stimulus method) plot_block_summary() (nrv.nmod.results.fascicle_results method) plot_cost_history() (nrv.optim.optim_utils.optim_results method) plot_fasc_state() (in module nrv.ui) plot_Nav_states() (in module nrv.ui) (nrv.nmod.results.myelinated_results method) plot_population() (in module nrv.nmod) plot_recruited_fibers() (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.nerve_results method) plot_stim() (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) plot_x() (nrv.nmod.fascicle method) plot_x_t() (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) point_source_electrode (class in nrv.fmod) pop() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) popitem() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) print_default_nrv_unit() (in module nrv.utils) print_mixedspace_domain() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) print_mixedspace_mat_pty() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) Problem (class in nrv.optim) progression_popup() (in module nrv.backend) prompt_debug() (in module nrv.backend) protocol (class in nrv.eit) (nrv.eit.eit_forward property) PSO_optimizer (class in nrv.optim) pulse() (nrv.utils.stimulus method) push() (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) pyeit_protocol (class in nrv.eit) R ramp() (nrv.utils.stimulus method) ramp_lim() (nrv.utils.stimulus method) raster_count_CE (class in nrv.optim.optim_utils) raster_plot() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) rasterize() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) rastrigin (class in nrv.utils) read_gmsh() (in module nrv.fmod.FEM.fenics_utils) rec_mat (nrv.eit.protocol property) (nrv.eit.pyeit_protocol property) rec_status() (nrv.backend.NRV_simulable method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) recieve_data_from_slave() (nrv.backend.Mcore_handler method) recieve_potential_array_from_master() (nrv.backend.Mcore_handler method) recorder (class in nrv.fmod) recording_point (class in nrv.fmod) recrutement_count_CE (class in nrv.optim.optim_utils) refine_entities() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) refine_min() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) refine_threshold() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) refinement_callback() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) remove_axons_electrode_overlap() (nrv.nmod.fascicle method) remove_axons_size_threshold() (nrv.nmod.fascicle method) remove_collision() (in module nrv.nmod) remove_fascicles() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_stimulation method) remove_key() (in module nrv.ui) (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) remove_myelinated_axons() (nrv.nmod.fascicle method) remove_non_NoR_zones() (in module nrv.ui) remove_outlier_axons() (in module nrv.nmod) remove_raster_artifacts() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) remove_unmyelinated_axons() (nrv.nmod.fascicle method) reset() (nrv.backend.pbar method) reset_electrodes() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) reset_parameters() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) reset_recording() (nrv.fmod.recording_point method) reset_recordings() (nrv.fmod.recorder method) reset_stimuli() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) reshape_axon() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) reshape_fascicle() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_stimulation method) reshape_nerve() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_stimulation method) reshape_outerBox() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_stimulation method) rise_error() (in module nrv.backend) rise_warning() (in module nrv.backend) rm_file() (in module nrv.ui) rm_sim_dir() (in module nrv.ui) rm_sim_dir_from_results() (in module nrv.ui) rmv_ext() (in module nrv.backend) rmv_keys() (in module nrv.ui) rosenbock (class in nrv.utils) rotate() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) rotate_axons() (nrv.nmod.fascicle method) rotate_fascicle() (nrv.nmod.fascicle method) run_model() (nrv.fmod.FEM_stimulation method) S sample_g_mem() (in module nrv.ui) save() (nrv.backend.NRV_class method) (nrv.backend.nrv_parameters method) (nrv.backend.NRV_results method) (nrv.backend.NRV_simulable method) (nrv.backend.sim_results method) (nrv.eit.eit_forward method) (nrv.eit.eit_inverse method) (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMResults method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) (nrv.fmod.FEM.fenics_utils.fenics_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.material method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) (nrv.optim.cost_function method) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.context_modifier method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.optim_results method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.optim.optim_utils.stimulus_CM method) (nrv.optim.Optimizer method) (nrv.optim.Problem method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation method) (nrv.utils.function_1D method) (nrv.utils.function_2D method) (nrv.utils.function_ND method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack method) (nrv.utils.nrv_function method) (nrv.utils.nrv_interp method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) (nrv.utils.stimulus method) save_axon() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) save_axon_population() (in module nrv.nmod) save_electrode() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) save_extracel_context() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) save_fascicle_configuration() (nrv.nmod.fascicle method) save_material() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) save_recorder() (nrv.fmod.recorder method) save_recording_point() (nrv.fmod.recording_point method) save_results() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) save_sim_res_list() (in module nrv.fmod.FEM.fenics_utils) save_sim_result() (nrv.fmod.FEM.fenics_utils.FEMResults method) save_SimParameters() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) save_stimulus() (nrv.utils.stimulus method) say_hello() (nrv.backend.Mcore_handler method) sci_round() (in module nrv.utils) scipy_optimizer (class in nrv.optim) search_threshold_dispatcher() (in module nrv.ui) send_back_array_to_dest() (nrv.backend.Mcore_handler method) send_data_to_master() (nrv.backend.Mcore_handler method) send_synchronization_flag() (nrv.backend.Mcore_handler method) set_anisotropic_conductivity() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_attributes() (in module nrv.backend) set_axon_membrane() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) set_axons_parameters() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) set_chara_blen() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) set_common_time_series() (in module nrv.utils) set_conductance_recorders() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) set_conductivity_function() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) set_context_modifier() (nrv.optim.cost_function method) set_cost_evaluation() (nrv.optim.cost_function method) set_electrodes_footprints() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) set_footprint() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) set_frequency() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_function() (nrv.utils.MeshCallBack method) set_gmsh_ncore() (nrv.backend.nrv_parameters method) set_gnd_facet() (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) set_ID() (nrv.nmod.fascicle method) (nrv.nmod.nerve method) set_ID_number() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.FEM_electrode method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) set_ionic_current_recorders() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) set_isotropic_conductivity() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_label() (nrv.backend.pbar method) set_log_level() (in module nrv.backend) set_Markov_Nav() (nrv.nmod.myelinated method) set_materials() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) set_membrane_current_recorders() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) set_membrane_voltage_recorders() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) set_mesh_file() (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) set_method() (nrv.fmod.recording_point method) set_name() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_Nav_recorders() (nrv.nmod.myelinated method) set_Ncore() (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM_stimulation method) set_nrv_verbosity() (nrv.backend.nrv_parameters method) set_parameter() (nrv.fmod.FEM.COMSOL_model method) set_parameters() (nrv.backend.NRV_class method) (nrv.backend.NRV_results method) (nrv.backend.NRV_simulable method) (nrv.backend.sim_results method) (nrv.eit.eit_forward method) (nrv.eit.eit_inverse method) (nrv.eit.protocol method) (nrv.eit.pyeit_protocol method) (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FEM_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.FEMParameters method) (nrv.fmod.FEM.fenics_utils.FEMResults method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) (nrv.fmod.FEM.fenics_utils.fenics_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.material method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.nmod.unmyelinated method) (nrv.optim.cost_function method) (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.charge_quantity_CE method) (nrv.optim.optim_utils.context_modifier method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.optim_results method) (nrv.optim.optim_utils.raster_count_CE method) (nrv.optim.optim_utils.recrutement_count_CE method) (nrv.optim.optim_utils.stim_energy_CE method) (nrv.optim.optim_utils.stimulus_CM method) (nrv.optim.Optimizer method) (nrv.optim.Problem method) (nrv.optim.PSO_optimizer method) (nrv.optim.scipy_optimizer method) (nrv.utils.ackley method) (nrv.utils.beale method) (nrv.utils.booth method) (nrv.utils.bukin6 method) (nrv.utils.cost_evaluation method) (nrv.utils.function_1D method) (nrv.utils.function_2D method) (nrv.utils.function_ND method) (nrv.utils.gate method) (nrv.utils.gaussian method) (nrv.utils.goldstein_price method) (nrv.utils.Id method) (nrv.utils.MeshCallBack method) (nrv.utils.nrv_function method) (nrv.utils.nrv_interp method) (nrv.utils.rastrigin method) (nrv.utils.rosenbock method) (nrv.utils.sphere method) (nrv.utils.stimulus method) set_particules_values_recorders() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) set_permitivity() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_recording_point() (nrv.fmod.recorder method) set_recording_volume() (nrv.fmod.recorder method) set_recording_yplane() (nrv.fmod.recorder method) set_recording_zplane() (nrv.fmod.recorder method) set_res() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) set_result_merging() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) set_sim_result() (nrv.fmod.FEM.fenics_utils.FEMResults method) set_solver_opt() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) set_source() (nrv.fmod.FEM.fenics_utils.f_material method) (nrv.fmod.FEM.fenics_utils.layered_material method) (nrv.fmod.material method) set_static_context() (nrv.optim.cost_function method) set_time() (nrv.fmod.recorder method) set_verbosity() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) setdefault() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) setup_FEM() (nrv.fmod.FEM_stimulation method) setup_sim() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) setup_simulations() (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) shut_recorder_down() (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) sigma (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.fenics_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) (nrv.fmod.material property) sigma_fen (nrv.fmod.FEM.fenics_utils.fenics_material property) sigma_func (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) sigma_xx (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) (nrv.fmod.material property) sigma_yy (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) (nrv.fmod.material property) sigma_zz (nrv.fmod.FEM.fenics_utils.f_material property) (nrv.fmod.FEM.fenics_utils.layered_material property) (nrv.fmod.material property) sim_results (class in nrv.backend) simulable() (in module nrv.backend) simulate() (nrv.backend.NRV_simulable method) (nrv.eit.eit_forward method) (nrv.nmod.axon method) (nrv.nmod.fascicle method) (nrv.nmod.myelinated method) (nrv.nmod.nerve method) (nrv.nmod.unmyelinated method) simulate_context() (nrv.optim.cost_function method) singlecore() (in module nrv.backend) sinus() (nrv.utils.stimulus method) snap_time() (nrv.utils.stimulus method) solve() (nrv.fmod.FEM.COMSOL_model method) (nrv.fmod.FEM.FENICS_lumped_impedance_model method) (nrv.fmod.FEM.FENICS_model method) (nrv.fmod.FEM.fenics_utils.FEMSimulation method) solve_and_save_sim() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) solver_info() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) sort() (nrv.utils.stimulus method) speed() (in module nrv.ui) (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) sphere (class in nrv.utils) split_APs() (nrv.nmod.results.axon_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.unmyelinated_results method) split_job_from_arrays() (nrv.backend.Mcore_handler method) split_job_from_arrays_to_slaves() (nrv.backend.Mcore_handler method) square() (nrv.utils.stimulus method) stabilization_it() (nrv.optim.optim_utils.optim_results method) stim_energy_CE (class in nrv.optim.optim_utils) stimulation (class in nrv.fmod) stimulus (class in nrv.utils) stimulus_CM (class in nrv.optim.optim_utils) stimulus_generator() (nrv.optim.optim_utils.biphasic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_CM method) (nrv.optim.optim_utils.harmonic_stimulus_with_pw_CM method) (nrv.optim.optim_utils.stimulus_CM method) str_to_function() (in module nrv.backend) sum_jobs() (nrv.backend.Mcore_handler method) synchronise_stimuli() (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.stimulation method) synchronize_processes() (in module nrv.backend) T to_nrv_unit() (in module nrv.utils) to_save (nrv.backend.NRV_results property) (nrv.backend.sim_results property) (nrv.nmod.results.axon_results property) (nrv.nmod.results.fascicle_results property) (nrv.nmod.results.myelinated_results property) (nrv.nmod.results.nerve_results property) (nrv.nmod.results.unmyelinated_results property) (nrv.optim.optim_utils.optim_results property) topology() (nrv.nmod.axon method) (nrv.nmod.myelinated method) (nrv.nmod.unmyelinated method) translate() (nrv.fmod.CUFF_electrode method) (nrv.fmod.CUFF_MP_electrode method) (nrv.fmod.electrode method) (nrv.fmod.extracellular_context method) (nrv.fmod.FEM_electrode method) (nrv.fmod.FEM_stimulation method) (nrv.fmod.LIFE_electrode method) (nrv.fmod.point_source_electrode method) (nrv.fmod.recorder method) (nrv.fmod.recording_point method) (nrv.fmod.stimulation method) translate_axons() (nrv.nmod.fascicle method) translate_fascicle() (nrv.nmod.fascicle method) U UNDERLINE (nrv.backend.bcolors attribute) unmyelinated (class in nrv.nmod) unmyelinated_results (class in nrv.nmod.results) update() (nrv.backend.NRV_results method) (nrv.backend.pbar method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) update_fenics_sigma() (nrv.fmod.FEM.fenics_utils.fenics_material method) update_interpolator() (nrv.utils.nrv_interp method) update_mat() (nrv.fmod.FEM.fenics_utils.fenics_material method) V V_from_meshfile() (in module nrv.fmod.FEM.fenics_utils) values() (nrv.backend.NRV_results method) (nrv.backend.sim_results method) (nrv.nmod.results.axon_results method) (nrv.nmod.results.fascicle_results method) (nrv.nmod.results.myelinated_results method) (nrv.nmod.results.nerve_results method) (nrv.nmod.results.unmyelinated_results method) (nrv.optim.optim_utils.optim_results method) vector() (nrv.fmod.FEM.fenics_utils.FEMResults method) visualize() (nrv.fmod.FEM.mesh_creator.MshCreator method) (nrv.fmod.FEM.mesh_creator.NerveMshCreator method) visualize_mesh() (nrv.fmod.FEM.fenics_utils.FEMSimulation method) vmem_plot() (in module nrv.ui) W WARNING (nrv.backend.bcolors attribute)